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General Function Checklist

  •  Mac
  •  Linux
  •  Windows
    • Open a species from the home page of IGB.  The examples below are using Arabidopsis Thaliana.
    • Ensure that x and y zoomers are completely zoomed out.
    • Ensure that the tracks consume all of the available vertical space


Zoom, Drag, and Selection Operations

  •  Mac
  •  Linux
  •  Windows

  • Zoom in by click and dragging across the coordinates.  Note that the screenshot is missing the mouse cursor.  The blue highlighted area represents the area created by dragging the cursor.

  • Adjust the zoom such that multiple gene models are in view

  • Double click on the barb wire region of a gene model.  The view should zoom to fit the selected gene model.

  • Zoom back out to view multiple gene models
  • Right click on a different gene model.
  • Validate that the menu looks as follows

  • Select "Zoom to Selected"
  • The view should zoom to fit the selected gene model
  • Zoom slightly out in both the x and y direction.
  • Select the hand "Grab Tool".

  • Click and drag anywhere in the track view.



  • Validate that the panel scrolls in the direction of the cursor.
  •  Mac
  •  Linux
  •  Windows
  • Select the "Selection Tool"

  • Go to a group of gene models that are stacked

  • Click and drag across the gene models.

  • Validate that all of the gene models are selected.
  •  Mac
  •  Linux
  •  Windows

  • Quick search is functioning as expected.
  •  Mac
  •  Linux
  •  Windows


  •  Select the human genome and type "npas3" into the Quick search box (Quick search should NOT be case sensitive).
  •  Validate that "NPAS3" is suggested in the Quick search drop-down menu.
  •  Press enter to navigate to the NPAS3 gene.

Validate that IGB has navigated to the correct gene.

  • Zooming on large genes does not cause IGB to freeze when the Annotation Label Field is set to *none*.
  •  Mac
  •  Linux
  •  Windows

     Change Label Field in the Annotation tab to *none*.
  •  Mac
  •  Linux
  •  Windows


    Use the Quick search feature to navigate to the NPAS3 gene.
  •  Mac
  •  Linux
  •  Windows

     Use the horizontal zoom slider to zoom into the NPAS3 gene as far as you can possibly zoom. Zoom out completely and then zoom in again.
  •  Mac
  •  Linux
  •  Windows



    Validate that IGB has not frozen.
  •  Mac
  •  Linux
  •  Windows


    The Current Genome tab is functioning as expected.
  •  Mac
  •  Linux
  •  Windows
  • Use the current genome tab to navigate to chromosome 7 of the most recent version of the human genome.
  • Verify that IGB has navigated to chromosome 7 of the most recent human genome.

 

  • The display can be panned using the following objects:

  •   
  • Horizontal scroll bar
    •  Mac
    •  Linux
    •  Windows


    Vertical scroll bar
    •  Mac
    •  Linux
    •  Windows


    Arrow toolbar shortcuts
    •  Mac
    •  Linux
    •  Windows

  • Auto Scroll
  •  Mac
  •  Linux
  •  Windows




    Finally, review the users guide to make sure it is consistent with IGB, images are up-to-date, etc.
  •  Panning the Display
  •  Zooming