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Release Version

9.0.2

Date 

JIRA Stories

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Key Summary T Created Updated Assignee P Status Resolution Labels
IGBF-1471 Fix bigwig parsing code in 9.0.2 Bug Nov 29, 2018 Nov 30, 2018 Srishti Tiwari Blocker Closed Done Advanced
IGBF-1467 IGB throwing "AWT-EventQueue-0" java.lang.NullPointerException Bug Nov 19, 2018 Nov 28, 2018 Kiran Korey Blocker Closed Done
IGBF-1460 Startup Error in Console (com.google.gson.stream.MalformedJsonException) Bug Nov 12, 2018 Nov 28, 2018 Ann Loraine Major Closed Done
IGBF-1458 Fix problem installing on Mojave (Mac OS 10.14) Bug Nov 08, 2018 Nov 19, 2018 Kiran Korey Blocker Closed Done Advanced
IGBF-1457 Startup Error in Console (ERROR com.affymetrix.main.OSGiHandler) Bug Nov 08, 2018 Nov 28, 2018 Kiran Korey Major Closed Done Advanced
IGBF-1456 Add backup sites for RNA-Seq, ChIP-Seq, DNA-Seq Improvement Nov 07, 2018 Nov 12, 2018 Unassigned Major Closed Done Beginner
IGBF-1428 Create 9.0.2 release branch Task Oct 22, 2018 Nov 16, 2018 Ann Loraine Major Closed Done Advanced
IGBF-1423 Add potato genome assembly synonyms to IGB species.txt Task Oct 03, 2018 Oct 09, 2018 Ann Loraine Major Closed Done Intermediate
IGBF-1421 Add potato genome to IGB Quickload Improvement Oct 03, 2018 Oct 09, 2018 Ann Loraine Major Closed Done Intermediate
IGBF-1417 Create new artifact with bigbed and bigwig parsing code from IGV codebase Task Sep 27, 2018 Oct 29, 2018 Srishti Tiwari Major Closed Done Advanced
IGBF-1415 Fix exception on startup after resetting preferences Bug Sep 27, 2018 Oct 04, 2018 Sneha Ramesh Watharkar Major Closed Done Intermediate
IGBF-1414 Check that 2008 yeast genome synonyms are in species.txt and synonyms.txt Task Sep 26, 2018 Oct 01, 2018 Srishti Tiwari Critical Closed Done Beginner
IGBF-1404 Restore GNC and Ecker ChIP-Seq data Bug Sep 17, 2018 Oct 18, 2018 Ann Loraine Major Closed Done Intermediate
IGBF-1403 Add DNA-Seq and ChIP-Seq Quickload sources Improvement Sep 17, 2018 Nov 28, 2018 Ann Loraine Major Closed Done Beginner
IGBF-1402 Error while loading data from eFP-Seq Browser (Show: Alignments in IGB) when using Firefox Bug Sep 11, 2018 Oct 04, 2018 Srishti Tiwari Major Closed Done Intermediate
IGBF-1380 Support newer VCF - User request Improvement Aug 07, 2018 Sep 11, 2018 Srishti Tiwari Major Closed Done Advanced
IGBF-1379 Investigate why bookmark data set not loading Bug Aug 03, 2018 Aug 30, 2018 Kiran Korey Major Closed Done Intermediate
IGBF-1371 Remove obsolete dependency statements from pom.xml Task Jul 27, 2018 Sep 04, 2018 Kiran Korey Major Closed Done Intermediate
IGBF-1366 Fix App Manager failure to load bundles when running in Development mode Bug Jul 18, 2018 Nov 08, 2018 Kiran Korey Major Closed Done Advanced
IGBF-1365 improve bar.js to handle no response from IGB Improvement Jul 17, 2018 Jul 20, 2018 Sneha Ramesh Watharkar Major Closed Done Intermediate
IGBF-1364 Turn off "zoom in and click load data" message if using position bookmark Improvement Jul 15, 2018 Sep 06, 2018 Srishti Tiwari Major Closed Done Advanced
IGBF-1363 Fix foreground and add new style attributes to annots.xml for BAR Quickload Bug Jul 15, 2018 Aug 14, 2018 Ivory Blakley Major Closed Done intermediate
IGBF-1362 Investigate and improve when IGB shows certificate dialog Improvement Jul 13, 2018 Sep 13, 2019 Kiran Korey Major Closed Done intermediate
IGBF-1354 creating a new web link alters existing custom web links Bug Jul 05, 2018 Nov 08, 2018 Tarun Mall Major Closed Done Advanced
IGBF-1353 Optimize IGB Javascript bridge code Bug Jul 05, 2018 Jul 20, 2018 Sneha Ramesh Watharkar Major Closed Done intermediate
IGBF-1352 Fix wrong link in Help menu Bug Jul 05, 2018 Jul 31, 2018 Anh Moss Major Closed Done Beginner
IGBF-1351 Document how Apps get access to currently selected items in IGB Task Jul 05, 2018 Jul 31, 2018 Ivory Blakley Critical Closed Done intermediate
IGBF-1350 Change 9.0.1 to 9.0.2 on master branch Improvement Jul 05, 2018 Dec 09, 2019 Mason Meyer Major Closed Done Intermediate
IGBF-1348 Identify hard-coded URLs in IGB code base Bug Jul 04, 2018 Sep 05, 2018 Sneha Ramesh Watharkar Major Closed Done Advanced
IGBF-1346 bitbucket pipelines yml file wrongly installed on users computers Improvement Jul 03, 2018 Nov 08, 2018 Ann Loraine Major Closed Done Advanced
IGBF-1345 Fix image dimensions for smooth transition bioviz.org Improvement Jul 03, 2018 Jul 10, 2018 Sneha Ramesh Watharkar Major Closed Done Beginner
IGBF-1329 Update graph test images Task Jun 28, 2018 Jul 05, 2018 Ivory Blakley Major Closed Done Advanced
IGBF-1321 Test for errors due to htsjdk library update Task Jun 27, 2018 Aug 15, 2018 Ivory Blakley Major Closed Done Advanced
IGBF-1308 Fix contig name error in ProtAnnot window title Bug Jun 19, 2018 Sep 14, 2018 Anh Moss Minor Closed Done Beginner
IGBF-1307 Update ProtAnnot Release Testing module Documentation Jun 19, 2018 Jul 31, 2018 Anh Moss Major Closed Done Intermediate
IGBF-1305 Upgrade Jquery in Bioviz site to remove console errors and warrnings Bug Jun 19, 2018 Jul 05, 2018 Sneha Ramesh Watharkar Major Closed Done Beginner
IGBF-1288 Improve page load time of bioviz site and check responsiveness Bug Jun 13, 2018 Nov 08, 2018 Sneha Ramesh Watharkar Major Closed Done Intermediate
IGBF-1287 REST API parameter sym_name not respected Improvement Jun 08, 2018 Nov 08, 2018 Kiran Korey Major Closed Done Advanced
IGBF-1286 Support tilde as shorthand for HOME.DIRECTORY in snapshotmainView Improvement Jun 08, 2018 Nov 08, 2018 Kiran Korey Major Closed Done Intermediate
IGBF-1277 Test Advanced search panel Documentation Jun 07, 2018 Jul 05, 2018 Ivory Blakley Major Closed Done
IGBF-1262 Create release testing module for synonyms Task May 30, 2018 Jul 03, 2018 Ivory Blakley Trivial Closed Done Synonyms
IGBF-1215 investigate startup times of IGB when it is behind a firewall which blocks everything. Improvement Mar 17, 2018 Jul 23, 2018 Kiran Korey Major Closed Done Advanced
IGBF-1212 Enable resizing Open Url dialog, enlarge text entry Improvement Mar 08, 2018 Oct 09, 2018 Pranav Sanjay Tambvekar Minor Closed Done Beginner
IGBF-1196 remove bundle cache when running mvn clean Improvement Dec 20, 2017 Jul 05, 2018 Sneha Ramesh Watharkar Major Closed Done Beginner
IGBF-1183 Convert Tools->Configure Web Links ->Import to use OS native File Chooser Bug Sep 22, 2017 Sep 06, 2018 Srishti Tiwari Major Closed Done Intermediate
IGBF-1164 Allow resizing enter url window Bug Jun 16, 2017 Jul 12, 2018 Anh Moss Major Closed Done Beginner
IGBF-1108 App Manager does not properly handle installation error when not connected to the internet Bug Apr 08, 2016 Sep 06, 2018 Srishti Tiwari Major Closed Done Intermediate
IGBF-1098 Update BAM, tabix reader libraries Bug Feb 23, 2016 Apr 28, 2019 Kiran Korey Major Closed Done Advanced


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Mason Meyer
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