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Release Version

9.0.1

Date7/5/18

JIRA Stories

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Key Summary T Created Updated Assignee P Status Resolution Labels
IGBF-1349 update URL for Comments link in IGB updater Improvement Jul 04, 2018 Jul 05, 2018 Ann Loraine Major Closed Done
IGBF-1337 Test the IGB release & Install4J update process Task Jul 03, 2018 Jul 05, 2018 Ann Loraine Major Closed Done
IGBF-1332 Set up files on BioViz for upcoming release Task Jun 29, 2018 Jul 05, 2018 Ann Loraine Major Closed Done
IGBF-1331 test annotations track operations on linux and windows Task Jun 29, 2018 Jun 29, 2018 Kiran Korey Major Closed Done
IGBF-1330 test Synoyms in linux and wndows Bug Jun 29, 2018 Jun 29, 2018 Kiran Korey Major Closed Done
IGBF-1326 Test Graph Track Operations in Linux Task Jun 28, 2018 Jun 29, 2018 Kiran Korey Major Closed Done
IGBF-1323 test keyboard shortcuts in linux Task Jun 28, 2018 Jun 29, 2018 Ivory Blakley Major Closed Done
IGBF-1315 psl file for smoke testing Task Jun 26, 2018 Jun 29, 2018 Anh Moss Major Closed Done
IGBF-1302 test track operations on mac Task Jun 15, 2018 Jun 29, 2018 Ivory Blakley Major Closed Done
IGBF-1301 Add detail to track operators release testing module Bug Jun 15, 2018 Jun 29, 2018 Ivory Blakley Major Closed Done
IGBF-1299 chromosome synonyms file is not taking effect Bug Jun 15, 2018 Jun 29, 2018 Unassigned Major Closed Done
IGBF-1249 exceptions are thrown on startup when loading data providers Bug May 29, 2018 Jun 29, 2018 Unassigned Major Closed Done introduced-in-9.0.1
IGBF-1248 9.0.1 Final Release Testing Bug May 29, 2018 Jun 29, 2018 Unassigned Major Closed Done
IGBF-1245 command socket refuses connect Bug May 25, 2018 Jul 03, 2018 Ivory Blakley Major Closed Done
IGBF-1244 App Manager can't install apps Bug May 25, 2018 Nov 19, 2018 Kiran Korey Major Closed Done introduced-in-9.0.1
IGBF-1237 allow annots.xml color strings to include # at the front Improvement May 17, 2018 Jul 03, 2018 Ivory Blakley Major Closed Done Beginner
IGBF-1234 Bitbucket pipelines failing to curl artifacts intermittently for release workflow Bug May 09, 2018 May 24, 2018 Ann Loraine Major Closed Done Bitbucket_Pipelines
IGBF-1232 Edit filter not working Bug Apr 25, 2018 May 29, 2018 Mason Meyer Major Closed Done
IGBF-1228 Edit filter taking the default score value (10) instead of the most recent score value Bug Apr 13, 2018 Jul 01, 2018 Unassigned Minor Closed Done
IGBF-1226 IGB doesn't read gzipped fasta file Bug Apr 11, 2018 May 24, 2018 Ivory Blakley Major Closed Done Beginner
IGBF-1224 Fix Typo on Bioviz that reads "visualizating" Task Mar 26, 2018 May 24, 2018 Ann Loraine Major Closed Done
IGBF-1221 Order of data sources in Available Datasets section of Data Access tab Bug Mar 23, 2018 May 24, 2018 Ivory Blakley Major Closed Done
IGBF-1220 Ensure that IGB is loading sequences according to load priority Bug Mar 23, 2018 May 29, 2018 Sneha Ramesh Watharkar Major Closed Done
IGBF-1219 Load Priority should be updated from preferences Bug Mar 23, 2018 Jun 29, 2018 Unassigned Major Closed Done
IGBF-1218 Add new bar.html (like galaxy.html) to enable launching IGB from BAR Improvement Mar 21, 2018 Nov 15, 2019 Mason Meyer Major Closed Done
IGBF-1210 Add BAR QL site to default data providers Improvement Mar 07, 2018 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1206 Duplicate QL sites appear in new versions of IGB with changed default QL sites Bug Jan 28, 2018 Oct 04, 2018 Mason Meyer Major Closed Done
IGBF-1205 Add heat map yellow/blue option for graphs Improvement Jan 25, 2018 Jul 05, 2018 Mason Meyer Major Closed Done
IGBF-1204 allow entering decimals in filter by score Improvement Jan 25, 2018 May 29, 2018 Mason Meyer Major Closed Done
IGBF-1203 fix build error Bug Jan 25, 2018 May 24, 2018 Ann Loraine Major Closed Done
IGBF-1200 remove pollen and cyto QL sites and add http://lorainelab-quickload.scidas.org/rnaseq RNA-Seq QL site Bug Jan 09, 2018 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1198 Fix about igb screen; add Sanket Patil to contributors, check (and fix) links Improvement Dec 20, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1197 Add new branch workflow to IGB bitbucket pipelines Improvement Dec 20, 2017 May 24, 2018 Sanket Patil Major Closed Done Beginner
IGBF-1195 Add soybean RNA-Seq quickload site to IGB Improvement Dec 20, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1194 Fix build failure occurred due to merge conflict on IGBF-1186 Bug Dec 19, 2017 Dec 20, 2017 Ann Loraine Major Closed Done
IGBF-1192 IGB zip folder contains unwanted folder hierarchy Bug Dec 18, 2017 Dec 21, 2017 Mason Meyer Major Closed Done Bitbucket_Pipelines
IGBF-1191 Add version support to igb_7.install4j file through bitbucket pipelines instead of hardcoding values Bug Dec 18, 2017 May 24, 2018 Ann Loraine Major Closed Done
IGBF-1190 Remove possum from IGB start screen image carousel Bug Oct 19, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1186 Preferences->Chromosome Synonyms File - Convert file chooser to the operating system's Native File Chooser Bug Sep 22, 2017 Dec 21, 2017 Mason Meyer Major Closed Done
IGBF-1185 Preferences->Version Synonyms File - Convert file chooser to the operating system's Native File Chooser Bug Sep 22, 2017 Dec 21, 2017 Mason Meyer Major Closed Done
IGBF-1184 Tools->Configure Web Links ->Export - Convert file chooser to the operating system's Native File Chooser Bug Sep 22, 2017 Aug 20, 2018 Mason Meyer Major Closed Done
IGBF-1182 Tools - Run Script -Convert file chooser to the operating system's Native File Chooser Bug Sep 22, 2017 Dec 18, 2017 Unassigned Major Closed Done
IGBF-1179 Zip File Download is not working Bug Sep 04, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1178 Migrate IGB CI from Jenkins to BitBucket pipelines Improvement Aug 21, 2017 Dec 12, 2018 Sanket Patil Major Closed Done
IGBF-1176 Update species.txt & synonyms.txt Improvement Aug 21, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1175 Check species.txt packaged with IGB to use correct genus for possum Bug Aug 21, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1173 IGB slows down when viewing Oxford Nanopore Long reads Bug Aug 07, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1172 Update IGB Quickload backup site URL Task Jul 28, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1158 Determine how to run IGB-fx in karaf using Windows "bat" script Improvement May 22, 2017 Mar 03, 2019 Unassigned Major Closed Done
IGBF-1157 Plugin Repository - Convert "Choose Local Folder" file chooser to the operating system's Native File Chooser Bug May 17, 2017 May 24, 2018 Unassigned Major Closed Done
IGBF-1154 Unable to use NCBI-BLAST right click option, error. Bug May 17, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1152 Import Bookmark-Convert file chooser to the operating system's Native File Chooser Bug May 17, 2017 May 24, 2018 Mason Meyer Major Closed Done
IGBF-1151 Save Session - Convert file chooser to the operating system's Native File Chooser Bug May 17, 2017 May 24, 2018 Unassigned Major Closed Done
IGBF-1150 Load Session-Convert file chooser to the operating system's Native File Chooser Bug May 17, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1149 default file extension for graph tracks Bug May 04, 2017 Sep 05, 2017 Mason Meyer Minor Closed Done
IGBF-1144 IGB (Live) freezes after running IGB from Netbeans Bug May 02, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1142 Investigate why tests are failing. Task Apr 26, 2017 Sep 05, 2017 Mason Meyer Major Closed Done intermediate testing
IGBF-1141 return IGB start screen image carousel to previous configuration Improvement Apr 26, 2017 Dec 21, 2017 Mason Meyer Minor Closed Done Beginner Easy first-timers-only
IGBF-1140 Convert "Choose Local Folder" file chooser to the operating system's Native File Chooser Bug Apr 21, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1139 Disable "View Read Sequence" for all file formats except PSLX and BAM Bug Apr 21, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1137 Improve start codon box color in Sequence Viewer Improvement Apr 16, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1136 Edit "About IGB" to show names of current & past contributors. Improvement Apr 16, 2017 Jul 05, 2018 Mason Meyer Major Closed Done
IGBF-1131 Left align track names in Data Management Table Improvement Mar 29, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1130 Make track order in Data Management Table logical Improvement Mar 29, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1129 Selecting multiple tracks and performing "Color by" should color all selected tracks Bug Mar 29, 2017 May 29, 2018 Mason Meyer Major Closed Done
IGBF-1128 Save As... feature appends extra text that can cause the file name to be invalid Bug Mar 21, 2017 Sep 24, 2018 Mason Meyer Major Closed Done File_Formats
IGBF-1126 Implement ability to persist Heatmap setting between sessions New Feature May 03, 2016 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1124 BLAST feature stopped working Bug Feb 15, 2017 Sep 05, 2017 Mason Meyer Major Closed Done
IGBF-1123 BigBed data does not display after loading from a zoomed state Bug Jan 30, 2017 Jun 01, 2017 Mason Meyer Major Closed Done
IGBF-1120 Create preferences management panel Task Jul 26, 2016 Sep 05, 2017 Devdatta Kulkarni Major Closed Done
IGBF-1092 Save As... (bedgraph) feature uses spaces instead of tabs Bug Feb 09, 2016 Mar 21, 2017 Mason Meyer Major Closed Done
IGBF-1090 Implement saving of all chromosomes when exporting as bedgraph Improvement Feb 09, 2016 Sep 19, 2017 Mason Meyer Major Closed Done
IGBF-1058 Quick search may navigate to wrong gene again Bug Dec 09, 2015 Mar 02, 2017 Mason Meyer Major Closed Done Search
IGBF-1044 Actions that open new windows should unminimize and bring to front the window if already opened (Windows problem only) Improvement Nov 20, 2015 Apr 17, 2017 Mason Meyer Major Closed Done
IGBF-771 Color by... "length" needs show button to open heatmap editor. Improvement Jun 16, 2014 Sep 05, 2017 Mason Meyer Minor Closed Done
IGBF-675 Reopening a file that was just deleted from a custom genome generates a null pointer exception Bug May 26, 2015 May 24, 2018 Unassigned Major Closed Done
IGBF-595 remove distracting punctuation from Color By dialog Improvement Apr 27, 2015 Sep 05, 2017 Mason Meyer Minor Closed Done
IGBF-201 Rename Joined Graphs Improvement Sep 23, 2014 Sep 19, 2017 Mason Meyer Major Closed Done
IGBF-192 Searching for multiple residues at same time results in IGB searching indefinitely Bug Sep 16, 2014 May 24, 2018 Unassigned Major Closed Done


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Mason Meyer
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