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Release Version

8.4.2

Date8/10/15

JIRA Stories

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Key Summary T Created Updated Due Assignee Reporter P Status Resolution
IGBF-868 Editing URL of secured quickoad sites causes strange behavior in IGB including the inability to remove a data source Bug Aug 06, 2015 Aug 10, 2015 John Eckstein Mason Meyer Major Closed Done
IGBF-866 Not selecting "Save Password" checkbox when adding 2 secured Quickoad sites causes a bad user experience. Bug Aug 06, 2015 Aug 18, 2015 Mason Meyer Mason Meyer Major Closed Done
IGBF-840 Working with multiple secure quickload sites causes authentication popup to trigger unexpectedly Bug Aug 04, 2015 Aug 20, 2015 Mason Meyer David Norris Major Closed Done
IGBF-839 Prepare IGB 8.4.2 Minor Release Task Aug 04, 2015 Aug 11, 2015 David Norris Mason Meyer Major Closed Done
IGBF-837 Pop up is appearing when there is a large number of contigs only on IGB 8.5 branch Bug Aug 04, 2015 Aug 10, 2015 David Norris David Norris Major Closed Done
IGBF-805 Update the A. lyrata genome appropriately Task Jul 16, 2015 Aug 06, 2015 Ann Loraine Mason Meyer Major Closed Done
IGBF-796 Local species.txt is parsed incorrectly Bug Jul 07, 2015 Aug 10, 2015 John Eckstein Mason Meyer Major Closed Done
IGBF-748 Spaces getting converted to "%20" in Data Sources table Bug Jun 18, 2015 Aug 10, 2015 Mason Meyer Mason Meyer Major Closed Done


Subsystem Tested

SubsystemReviewerTestedNot Required
ProtAnnotTarun Mall
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Data ProviderTarun Mall
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ProtAnnot Bugs

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Key Summary T Created Updated Due Assignee Reporter P Status Resolution
IGBF-1361 Handle error when ProtAnnot cannot load sequence Bug Jul 12, 2018 Oct 16, 2019 Unassigned Ivory Blakley Major To-Do Unresolved
IGBF-1001 ProtAnnot save paxml does not remember last saved file, does not add paxml extension Bug Nov 03, 2015 Dec 21, 2015 John Eckstein John Eckstein Major Closed Done
IGBF-984 Add arrow buttons to navigate left and right in ProtAnnot. Bug Oct 05, 2015 Dec 10, 2015 Mason Meyer Tarun Mall Major Closed Done
IGBF-983 Disable drag select on DNA sequence in ProtAnnot Bug Oct 05, 2015 Oct 16, 2019 John Eckstein Tarun Mall Major To-Do Unresolved
IGBF-982 Need to add Hand and Arrow actions in protannot. Bug Oct 05, 2015 Dec 02, 2015 John Eckstein Tarun Mall Major Closed Done
IGBF-977 Exception generated when dragging at the intersection of sequence axis and zoom stripe in ProtAnnot Bug Sep 30, 2015 Nov 23, 2015 Mason Meyer Mason Meyer Major Closed Done
IGBF-973 ProtAnnot click drag UX Improvement Sep 25, 2015 Nov 24, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-972 If ac does not start with IPR then create URL for Google instead of IP database Improvement Sep 25, 2015 Sep 30, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-971 Properties URL in ProtAnnot should be blue and underlined Improvement Sep 25, 2015 Sep 30, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-970 ProtAnnot gene model properties "method" is blank Improvement Sep 25, 2015 Oct 16, 2019 Mason Meyer John Eckstein Major To-Do Done
IGBF-969 Missing ProtAnnot icon in IPS search modal Improvement Sep 25, 2015 Sep 30, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-968 inline email validation in ProtAnnot IPS Improvement Sep 25, 2015 Nov 24, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-967 Remove view menu option in ProtAnnot Improvement Sep 25, 2015 Sep 29, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-964 Open file and Save Image need to match IGB in ProtAnnot Improvement Sep 25, 2015 Nov 24, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-963 Use native file chooser in ProtAnnot Improvement Sep 25, 2015 Nov 24, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-962 Sort properties on gene model in ProtAnnot Improvement Sep 25, 2015 Sep 29, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-961 Remove copy protein sequence from context menu and main menu in ProtAnnot Improvement Sep 25, 2015 Sep 29, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-951 ProtAnnot spans may be missing a description field in the Properties tab Bug Sep 15, 2015 Sep 22, 2015 Mason Meyer Mason Meyer Major Closed Done
IGBF-950 The Cancel and Close options have different functions in ProtAnnot preferences Improvement Sep 15, 2015 Oct 16, 2019 Unassigned Mason Meyer Major To-Do Unresolved
IGBF-949 ProtAnnot Span label colors are not updating based on span colors Improvement Sep 15, 2015 Sep 21, 2015 Mason Meyer Mason Meyer Major Closed Done
Showing 20 out of 59 issues Refresh

Data Provider Bugs

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Key Summary T Created Updated Due Assignee Reporter P Status Resolution
IGBF-1114 Enabling a large Quickload site may cause delays during a jump-zoom event Bug May 26, 2016 Jun 07, 2016 Mason Meyer Mason Meyer Major Closed Done
IGBF-1079 Opening a file by dragging-and-dropping causes freezing on Mac Bug Jan 28, 2016 Mar 18, 2016 David Norris Mason Meyer Major Closed Done
IGBF-1061 clearing data set fails when refreshing QL server Bug Dec 16, 2015 Dec 18, 2015 Mason Meyer Ann Loraine Major Closed Done
IGBF-1060 Disable ability to store empty passwords on dataproviders Bug Dec 11, 2015 Dec 18, 2015 Mason Meyer David Norris Major Closed Done
IGBF-1059 Symloaders not handling non-bed formats properly Bug Dec 10, 2015 Dec 18, 2015 David Norris John Eckstein Major Closed Done
OLDBUGS-1 IGB does not handle genomes with many contigs sensibly, and can have problems with file descriptor limits Bug Dec 07, 2015 May 26, 2016 John Eckstein David Norris Major Open Unresolved
IGBF-1051 Improve error handling around data provider credentials Bug Dec 07, 2015 Dec 18, 2015 Mason Meyer David Norris Major Closed Done
IGBF-1020 Refactor Bed sorter Improvement Nov 12, 2015 Nov 20, 2015 Mason Meyer Mason Meyer Major Closed Done
IGBF-1005 Create narrowPeak Sym instead of reusing UCSCBedSym for visualization Task Nov 06, 2015 Nov 20, 2015 David Norris David Norris Major Closed Done
IGBF-998 Popups on startup of 8.5 Bug Oct 22, 2015 Nov 20, 2015 Mason Meyer John Eckstein Major Closed Done
IGBF-902 QuickloadDataProvider contents.txt request is not properly handling http 500 response Bug Aug 26, 2015 Sep 01, 2015 Mason Meyer David Norris Major Closed Done
IGBF-866 Not selecting "Save Password" checkbox when adding 2 secured Quickoad sites causes a bad user experience. Bug Aug 06, 2015 Aug 18, 2015 Mason Meyer Mason Meyer Major Closed Done
IGBF-840 Working with multiple secure quickload sites causes authentication popup to trigger unexpectedly Bug Aug 04, 2015 Aug 20, 2015 Mason Meyer David Norris Major Closed Done
IGBF-837 Pop up is appearing when there is a large number of contigs only on IGB 8.5 branch Bug Aug 04, 2015 Aug 10, 2015 David Norris David Norris Major Closed Done
IGBF-810 species.txt again not being used to add new species to Species menu Bug Jul 20, 2015 Nov 20, 2015 Mason Meyer Ann Loraine Major Closed Done
IGBF-808 Greatly improve propagation of error handling of quickload meta data parsing issues. New Feature Jul 19, 2015 Nov 19, 2015 Mason Meyer Ann Loraine Major Closed Done
IGBF-802 Make the "Save Password" checkbox checked by default Task Jul 16, 2015 Nov 20, 2015 Mason Meyer Mason Meyer Major Closed Done
IGBF-796 Local species.txt is parsed incorrectly Bug Jul 07, 2015 Aug 10, 2015 John Eckstein Mason Meyer Major Closed Done
IGBF-785 request confirmation from user when loading BAM file from large region from QL Improvement Jul 06, 2015 Nov 20, 2015 Tarun Mall Ann Loraine Major Closed Done
IGBF-748 Spaces getting converted to "%20" in Data Sources table Bug Jun 18, 2015 Aug 10, 2015 Mason Meyer Mason Meyer Major Closed Done
Showing 20 out of 23 issues Refresh

Possible Regressions ReviewedDavid Norris
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Possible Regressions Tested

 


 

JIRA Sprint Stories TaggedJohn Eckstein
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Reviewed ByJohn Eckstein
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Approved By{{ approver name }}
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