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Insertions - Residues flanking insertion site are shown in black with a white background by default (purple on white here); triangular shapes between them point to the location of the inserted base(s) present in the aligned sequence but not in the reference.
Select an insertion and the Selection Info tab to display the sequence of inserted bases
- Deletions - Residues deleted in the aligned sequenced relative to the reference appear as horizontal lines that are of the same color and connect flanking residues.
- Mismatches - Residues in the aligned sequence that do not match the corresponding base in the reference appear as highlighted bases. To highlight mismatches, click Load Sequence
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